What is the position of your ball valve now that it is working? is it fully open or partially closed?
I was just looking at the website you mentioned. It appears that you need to partially close (maybe about half-way) the valve on the full-siphon drain. After a minute or two, this will develop into a full siphon and take most of the water. If you leave it all the way open, then the two pipes (full-siphon and open-channel) are the same so neither is preferred.
A full-siphon moves a lot of water. I have a bean-animal style overflow using 1.5 inch pipes. With my ball valve only open about 1/8 to 1/4 of the way, it pulls 600 gph through the one pipe. What is your throughput?
Also, per the website, the air-line from the open-channel drain should go down into the overflow box, close to the regular water level. The idea is that if the water level rises, then it will get higher than the open end of the air-line and block the air-flow. This blockage will turn the open-channel drain into a full-siphon, rapidly dropping the water level. Do you intend to implement it that way, too?