You're open channel should have the top hole tapped with a fitting and a tube that is just above the water line to allow it to go full siphon should your main drain stop flowing. Yours is a good example of a possible flood scenario with the way you have it set up. If your primary stops, I am not sure a durso and an open standpipe will be able to take on the flow that your full-siphon was before. You also mentioned having a hole on the top of your full-siphon. This also is a no-no as you want it to go full-siphon and not anywhere in between.
If you look at Bean's setup, there is no external box. The inside tank box only needs elbows attached to the bulkheads. It doesn't need to be super wide. The majority of the plumbing is still external.
I don't like there to even be a scenario where something has to happen (drains working) in order for there to be no flood. The external box being lower than the internal box does present this scenario. Will it happen? Maybe not, but the design is still very poor. The external box should be higher than the internal box. In this scenario, there is no chance of a flood out the external box from water just standing. And again I will point to the tank trim limiting where the external box can rest against the tank which in all cases I have seen lowers the display tank water level to below the trim.
I highly doubt it’s a possible flood scenario since I run a low flow sump only about 3-4000Lph so I do think the durso would handle it. But let’s say the durso can't handle absolutely all of the flow or even blocks, the emergency channel is low enough to be a secondary drain or an even worse case turn into a siphon well before the box over flows.
But as I said if I was doing it again I wouldn't use a durso for the secondary and would just have 2x 90s with a hole in the top the same as the main drain just a bit higher so it could still be below the emergency and siphon.
When designing my plumbing I was trying to copy two slightly different ways of doing the same drain and you are right I overlooked the tube which should be added for the way mine is set up

on one hand I was copying a friend who has a tall enough external box that the durso gets completely covered and siphons (no tube) and at the same time was copying the Reef Synergy drains which just use 2x 90s (no tube), hence I didn’t even think of adding a tube to mine.
So thanks for the suggestion - I have seen so many of the internal box designs use that but didn't think about it in my case when it does still apply, so thanks for pointing that out, I'll get around to adding it sometime soon
I really suggest having a good look at the way Reef Synergy have designed the drains in their new shadow box. It is still a BA drain (siphon, secondary and emergency) Bean's original design wasn't to have the plumbing in an external box so they have changed the way things are set up slightly so it works better with an external box - but it is still a BA drain with the exact same functions.
One example is that putting a hole in the top of the full siphon might be a no-no with an internal box that has most of the plumbing external but with the plumbing in an external box you can (should) put a hole in the top of the full siphon to help it purge air and start up almost instantly and it doesn't impact the drains ability to siphon at all. Believe me it does run as a full siphon and not as anything in between - even with the hole. Same with the secondary drain, if done right (not like mine

) then a tube isn’t needed as in case of a blockage the whole drain covers with water (hole and all) and turns into a siphon.
Yes Bean's original design didn't have an external box, as far as I’m aware they weren't really a common thing back then. His drain style was an innovation when he came up with it and IMO off the shelf external boxes with "ghost" weirs have been an innovation since, it's silly to say no to external overflow boxes just because Bean didn't use one in his original design. I don't really have an issue with internal boxes but certainly don't think one is less safe than the other.
I fully understand your gripe about the boxes sometimes needing to sit lower due to the tank trim, I don’t know why but most tanks I see in Aus don’t have trim but I have seen pics of it happening on the forums and agree that is a design fault, but making the external box sit lower than the internal weir is a way of fixing or at least minimising that, it doesn’t make them any more of a risk.
Unless all 3 of your drains block (and you didn’t notice) an external box won’t overflow. Even with an internal box if all 3 of your drains blocked (and you didn’t notice) then the tank would STILL overflow unless your return chamber + ATO reservoir combined wouldn’t overflow your display which is most likely not the case for 90% of reefers out there, and from memory is why Bean came up with this drain in the first place as he didn’t feel comfortable knowing his tank would overflow if the 2 wet drains in a Herbie style drain got blocked.