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was wondering how to bond acrylic to glass i read some where acrylic and silicon dont mix do you have to glue it to the glass of the 30 gal or what any info would be greatly appreciated
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That is too small for 3 compartments, lose one and go with two. You should not use acrylic with glass. 100% chance you will eventually leak between compartments and a smaller chance you will crack the glass when the acrylic swells. Leaking between compartments is not a huge deal accept most disaster plans bank that the amount of water that will be pumped up to the display tank in the event of drain failure is limited based on how much water is in the return chamber. Once (not if) your acrylic baffles start to leak, you will lose this safety. Your return should have enough water to fit your return pump with maybe 1/2" to and inch on each side. Depth of your main section is dependent on your skimmer. At least as deep as the skimmer requires. You can always prop the skimmer up on a platform though. Contact a local glass shop and have proper baffles made.
I disagree on the acrylic baffles leaking. I have built numerous that didn't leak YET. Caulk correctly they work. Never had one break the glass either, IF cut correcty and not tight.

