I think most likely there *was* a fluke or parasite in that location and it’s developed a slight reaction, possibly bacterial. At this point, it wouldn’t concern me too much. I would just keep on your current course, and feed vitamin or selcon soaked foods in small frequent amounts.
Keep an eye on it. If the “black” area gets larger, tissue starts to recede, or he develops red or white patches, labored breathing etc, then antibiotics would be in order.