I'll start reading more about disease prevention to understand the basics a bit more. I would rather be strict then have another die off. I'll learn from this, thank you.
I have a theory that their test at the LFS aren't necessarily accurate. Since they actually don't make any sense to me either. Last week, I tested my nitrates the level was almost 10 or so. I don't believe that nitrates would disappear within a week. I think that's impossible. I was using NOPOX to lower it a bit. I've now removed the dosing tube from the tank.
As for your question about the water change, when I placed the rocks back, I changed the water afterwards.
I have a skimmer and wavemaker. So, the tank should be getting enough aeration. I did have a question about this actually. Do wavemakers need to be higher towards the surface. Where I have it now it's kind of in the middle.
As for what could've been toxic upon death due to peroxide, I'm not entirely sure. I know that pods were living in the tank and liked to be on the rocks. I would see them trying to escape when I would clean the rocks. Other than that, I guess possibly snails could've died to the peroxide, but I don't think this would be toxic.
I do see a couple of white dots on one fish (maybe?), but the clown fish likes pretty pristine. I haven't found the other smaller clown fish yet, unfortunately.