The original post read in part:
When you say it will go away as it uses the excess nutrients form the new stuff...if as the OP says - it was a clean system - to what excess nutrients are you referring?
And while I would generally agree that minor cyano outbreaks are nothing to get too worked up about - they are not totally innocuous as cyano can set the stage for other pathogens which are quite destructive. See:
Red Slime Algae (RSA) or Red Band Disease (RBD) - Aquarium Coral Diseases
I suspect the addition of the volume of a "clean system" addition has upset the phosphate/nitrate balance (below 6:1 nitrate to phosphate) and that a chemi-clean treatment should kill the exposed cyano and in the process elevate the N

ration back over 6:1 impeding its dominance.
If the volume of the "clean system" is large, or the available waste is insufficient for the chemi-clean to correct the imbalance - you can increase nitrate directly with with a little sodium nitrate.