Think of it this way. If the calibration solution IS 35 ppt seawater, it is 35 ppt seawater at all temperatures, and should read 35 ppt on a properly functioning ATC refractometer regardless of temp (assuming the temp is within the ATC temp range).
They only way that deviates is if the ATC function is not perfect. That seems to be what you find.
if the standard is a different chemical than 35 ppt seawater, like my diy standards using NaCl, then the only other way that happens is if the change in refractive index with temp are different than the change in refractive index with temp for seawater. Seawater is mostly NaCl and differences in temp effects for smallish temp changes will be quite small and are not likely detectable against the other errors in use, especially near the center of the atc range in the 25 deg C area.