I don't think it makes too much difference exactly how you fill the system, I filled mine from the DT only - filled the tank till it poured over the overflow & into the sump, let each sump compartment fill, overflow etc until the last compartment (with the return pump) was at a level I was happy with. Then turned on the return pump, adjusted flow so the overflow was balanced & topped up the sump level.
I'm not familiar with the exact sump you have, but generally speaking, the level of the sump is determined by the level of the last baffle. You have 3 compartments? Only the compartment with the return pump has a variable level, the other compartments have to fill to the overflow. I think you have an over/under last baffle configuration, is that right? You want the water in the return compartment to be no more than half inch lower that the top of the over baffle (it might have a comb on it). Lower than that & you'll get a trickling noise from the water overflowing the baffle. You could go a little higher - if the water is higher than the bottom of the comb, it won't be surface water overflowing & anything in the middle compartment (that fits through the comb) can flow through easier (pods for example). The return chamber is the one you need to monitor the level for top up of evaporation with fresh water, so mark your operating level once you have the return pump going & the water level is where you want it. You can always adjust the level of the return chamber if it's not how you want it. As long as you mark your initial level so you keep the salinity the same. Always make sure the water level is topped up to the line before doing anything such as water changes etc, or you'll alter the salinity.
Hope all that makes sense