Here is a good expanation of what BP's do, and how to use them.
I used BP's successfully for a number of years, and preferred it to other carbon sources, i.e. vodka, vinegar, etc. But it is important that, like anything else in this hobby, it be deployed and used properly. When first bringing the reactor on line, start slowly with about 1/3 of the recommended amount of pellets for your system, and add another 1/3 in about 2 - 3 weeks, and the balance in another 2 -3 weeks. You'll need to be able to adjust the flow, so the pellets are just fluidized...too much will simply slough off the bacteria, too little may cause the pellets to stick to each other eventually causing some clogging, diminished flow, and potentially creating an anaerobic condition possibly leading to hydogen sulfide. If you're using GFO or UV, I would turn them off, until you know whether you really need them or not. Keep the reactor in the dark. A good, properly size skimmer is important here since this is what will be removing the bulk of the bacteria that will be exiting through the effluent of the reactor. The more of the effluent going into the reactor the better, I used some left over PVC fittings(T and reducer), and plumbed it directly into my skimmer. Everyones system is going to be different, i.e. feeding habits will cause differenet levels of PO4, etc. So, I would suggest waiting to see how well the pellets remove the available PO4 before re deploying your GFO. A good Hanna meter is the best/affordable way to check your PO4 levels.