I'm not seeing any chromatic aberration. There are some areas that look like it, but those are a function of tank lighting and the way it passes through coral tissue. Some may be caused by the glass. If you're shooting through acrylic it can cause a rainbow effect that appears to be chromatic aberration. It's the acrylic doing it, not your lens. It will be more pronounced with thicker acrylic and can be a real pain with cheap acrylic. What I see in your image is expected, particularly with the tissue structure of chalices, and negligible.
You lens is not introducing any chromatic aberration. If it was, Canon wouldn't be able to sell a single 100-mm macor lens because no macro shooter would use it. Your extension tubes can't introduce CA because they have no glass. They simply change the point at which the image lands on the sensor.
What I do see is multiple edges in the back of the coral/top of your stacked image. There is also indication of multiple edges in some of the other nodules in the image. Those result when either the coral or your camera moves when you're shooting the stack. Once that happens, the overall image is ruined because you'll have those multiple edges and the rest of the image will not be sharp.
You must have a sturdy tripod to do this kind of photography and use a remote release or timer and mirror lockup to minimize any chance of camera movement. Flow must be shut off. Even then you can get movement as the coral contracts or expands its tissue while you're shooting the stack. I had a trach shot a couple of weeks ago that was going to be an absolute stunner. I shot the stack twice and both times the coral expanded/contracted, ruining both shots. I didn't see the movement while I was shooting because it was slow and subtle. But it was very obvious when I combined the stack. I'm still mad about it, but nothing I can do.
To see a clear example of the multiple edges I'm talking about, look in the upper right quadrant of this shot. You'll see where tentacles in one of the zoanthid polyps moved while I was shooting the stack, creating multiple edges. This is very common with zoanthid stacks.
Gary