I start with them off for the first few days, then transition to on low. The problem is, when everything that can't make it dies, you dump a ton of nutrients into the tank, and organics, and lord knows what else. This does cause a massive algal bloom, which is actually good. You want the bloom, because it uptakes the nutrients. Like
@Gregg @ ADP said, if you let the stages happen, they each generally die off and the next one cleans out the next nutrient problem. You need each stage to complete, because the stage removes something.
This is generally where people go wrong with this method. They see a bunch of horrible algae, and start dumping chemicals in to fix it, and then everything goes to heck. Never "fix" the cycle with chemicals. (bacteria is not a chemical, that's ok)
Let the algae grow. You will get alot of hair algae, and other things. Generally the only stuff I will siphon out is cyano or slime algae. Eventually it will stabilize to the point where you can add CUC.
If you bucket cycle rock to completion, and then add to the tank, I generally find that the algae blooms are smaller, and less gruesome, and probably a bit shorter, but the rock is less awesome.
People find some truly amazing hitchikers on live rock when you use the "chuck it all in" method. I've seen posts with corals, sponges, tunicates, and even *fish*. Also crabs, and shirmp, which.. maybe you don't want?
I truly feel the difference between a super stable system, and one that has all kinds of problems, is the amount of live sponges in the rock. That's why I use the "chuck it in" method.
I will note, that I do not use florida rock. This is just my personal insanity, but I don't like alot of the hitchikers that come from florida, but seeing how fiji rock is becoming impossible to get these days, I should probably get over it.