I eliminated the colonial hydroids with a dose of fish bendazole so now their tubes are what I am trying to remove. As far as the aiptasia, I know I still have a battle going on. Not sure if I am winning or losing that one but the rocks I removed are the ones with the hydroid tubes and lots of aiptasia so I cut the amount of aiptasia in the tank in about 1/2 by removing this rock. Definitely still have a battle going on.
I was convinced not to use acid, but I will read Randy's article on the bleach. I always want to hear what Randy advises.
P.S. I knew not to bake or boil the rock. You are 100% correct, and I believe there are even other dangers that you didn't list but I can't remember them right now.