I had that happen a couple of years ago. Polyps were out and feeding, next day were one-third gone, would still eat, a day or 2 later the polyp would be gone. That would repeat until the colony was gone. I figured it must be something eating them, maybe even living on, in, or under. I tried all the standard dips, revive, iodine types.
In desperation I made a dip of interceptor (it was still available ) and put an affected colony in it. Then I forgot and went to bed. The next morning there it was all expanded with feeders out in the dip container. I put it back in the display and it fully recovered. Later the same thing started happening to other acans, I did a whole tank treatment once a week for either 2 or 3 times and everything recovered.
Now I dip every new acan, scoly, chalice and other LPS for 2 or 3 hours in interceptor, and have not had a recurrence.
Nothing scientific but it worked for me.