In that article you quoted me I actually was referring to the pores in live rock.
Quote:
Think about it. Bacteria need surfaces and in our tanks, the surfaces are mostly on the substrate and the rocks. Not just on the rocks, but inside them, in the pores. The "rocks" we use in our tanks are not even real rocks. They were built by microscope creatures living on the rock. The creatures exuded this material and in the process of doing this, the "rock" was built full of pores. Inside these pores live the bacteria. The aerobic bacteria live near the surface and use the oxygen abundant there. The anaerobic bacteria live deeper in the pores and need far less, if any oxygen. I think they have larger noses to utilize the inadequate supplies of oxygen. Those are the bacteria that convert the nitrates to nitrate gas that escapes. End Quote.
In the substrate these bacteria also live but if the water can't get to the bacteria, the bacteria will do no good. We need to open channels for water flow so the bacteria has a chance to act on our water. I don't want to remove all the detritus but we need to open the pores in the rocks or the rock porosity is negated. In the substrate, I run a reverse UG filter which depends on water flow through the gravel. Most people do not. But with any substrait we need to have some sort of flow. If not, we have cement. Detritus is good because thats where bacteria live and feed, but they also need a means to get to the water.