Hi, what symptoms do your fish show? How did you diagnose internal parasites?
Fallow periods are for marine ich, it comes from data extrapolated from a paper written many years ago. It also happens to coincide with the needed fallow period for other external parasites. Fallow periods were not designed for internal parasites. There are three basic internal diseases: bacteria, protozoan and metazoan (worms). The first two are found in every fish, and only become diseases when the fish's resistance is lowered due to some stress. The metazoans can lay eggs, and some have secondary hosts, so clearing a tank of them is not well known. I rarely see metazoans in fish that didn't arrive with them when I got them.
Jay