Okay, so the sides of the hood take up the space that would normally be allocated to the RMS "arms" found at the end of the RMS track. Things would require some engineering...and likely a good amount of cutting to fit those in. Maybe the easiest solution is to just do away with the RMS arms and cut a small curved hole similar to a "(" shape on each end of your canopy to accommodate the RMS track itself. The highest point on that curve would be towards the top of the canopy.
You would need to carefully match the RMS track to the length of your canopy. I see that you're dealing with a 6ft tank so the RMS rail would need to be at minimum 72-76". The only size RMS rail that I see close to that range is the 70.5in which fits a tank width of 68.5in - 78.5. However, I think that assumes the remaining 2 inches will be covered by the RMS arms.
You might be forced to get the 80.5in track which is slightly too long, leaving at least 2-3 inches protruding from each end. Perhaps that's not a problem but I am skeptical. Obviously you would need something to keep the RMS track from sliding left-to-right so maybe this gives you something to clip onto for that purpose. Since the Ecotech "slides" used to mount the lights have very little material above the RMS track you should be able to make each "(" shaped hole on the ends of the canopy only about 1-2 inches below the top.
Good luck and keep us posted!