Hear me now, and believe me later, peristaltic pumps can totally screw things up - either pushing or pulling. You can try pulling, but, the negative pressure in your reactor might cause it to suck in air, filling it with bubbles and driving you nuts. If that happens, push water in with a small pump using the peristaltic pump after the reactor as a brake, with no pinch valves. This is a pricy way to do it, but, gives you the best flow control and resistance to clogs from detritus. Some kind of detritus filter (as a few have mentioned) is also a great idea - especially if a pinch valve is used..