I’m not an expert at this at all, BUT, I’ve done a bit of my own research on the matter (for a while I was looking at an 24x24x30 74G tower to make a garden eel garden) and have a few ideas.
Idea #1:
Minimize the overall amount of sand that’s present. Like, when you go to an LFS and see that there’s a plastic deli container filled with sand to support a tube anemone in an otherwise bare bottom or shallow substrate tank. You could use clever aquascaping so that the rock creates a dam whereby one zone in the tank can have a considerably deeper sandbed than the rest. Alternatively a dropoff style tank could accomplish the same thing. The eels will look for deep sand so maybe not right away, but even if it’s hidden I’d bet they’d eventually find the deep sandbed regions.
Idea #2: you need to pack your sand with organisms that will promote sand movement on an ongoing basis. One if not multiple pistol shrimp, jawfish, nassarius snails, etc. stuff that will go deep and make the most of the sandbed.
Idea #3: this is the most expensive idea IMO. Something akin to an under gravel filter but on a much larger scale. Either using consistent airflow to push out hydrogen sulfide pockets before they accumulate to such deadly points (keeping the sandbed highly aerobic) or alternatively, something akin to a dough hook on a stand mixer that occasionally activates. This would destroy the burrows, but garden eels can rebuild those pretty easily and it would totally stir up the sandbed.
Idea #4:
Just kinda live with the risk and see what happens?
idea #5:
Just use 4-8” instead of going to a proper foot thick, other people have managed to keep garden eels that way.