I also have rock in my sump that the water flows over....I replaced my bioballs years ago with lr could this also be causing any problems? the water flows on top of it in the sump!
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if you are using a filter sock on the drain coming down to the sump, then it is unlikely you've got detritus buildup on the rocks in the sump. my sump stays squeeky clean with the use of a filter sock 24/7. however it certainly wouldn't hurt to pull the rocks off and swish them around in a bucket of tank water to see if crap comes off...
with the rocks in that location in the sump you are basicially using them like bioballs which will allow nitrate to accumulate.
OK for this type of setup, if you have enough rock in the tank and a deep enough sandbed you should be ok. Rinse the sponge on the intake daily if you can. Run a filter sock 100 micron and change that daily. What is your flow like do you have enough to keep the uneaten food and detrius from settling out? What is your skimmer? Are you running a refugium with a macro algea that is harvested for nutrient export? How deep and what size is the sand in your tank? How much rock do you have? What is the foot print of the tank? Are all other parameters in check? what about phosphate?
is the rock in your sump exposed to air, or is it covered in water?

