Maybe - maybe not - could be true if you only calculate that a water from a reef aquarium have the sam organic content as free oceanic water. A small ecosystem like an aquarium is could be another question IMO. It depends - IMO - of the husbandry of the reef tank
The situation in a denitrator will be completely different from the situation in the tank. if an anoxic kept sulphur denitrator is used for lowering a high nitrate level in the beginning there will be enough nitrate available. An anoxic kept denitrator, the flow is managed in the function of the oxygen content in the influent which will stay +- the same, and most users target 0 nitrates in the effluent. In the beginning, a high autotrophic nitrate reduction rate is achieved by which most of the provided media will be autotrophically active and growing. The level descends and less nitrate is entered while keeping the same flow, 0 nitrate in the effluent. Less nitrate will become available and the autotrophic family will not grow anymore; when they start to die off the heterotrophic anaerobic remineralization rate will increase, also using nitrate, till nitrate is used up, As seawater is a good sulfate source, sulfate is unlimited available. HS and ammonia are produced,still with 0 nitrates in the effluent.
Using BADES all the above is avoided.
In most cases - I think its true that the contribution of NH
3/NH
4 from fish and other aquatic animals is higher than the NH
3/NH
4 contribution from bacterial mineralisation (if you exclude the aminofication from NO
3 done by bacteria with DNRA capability - they can complicates the analysis significantly). This thoughts is based on the fact that around 80 % of the N from the eaten food non used for build up of fish (and other aquatic animals) biomass will escape to the water in form of NH
3/NH
4 through the gills. however - it remains 20 % in the form of pop and it will be mineralised into NH3/NH4 with help of heterotrophic bacteria (aerobes and anaerobes does not matter - the aerobic heterotrophic bacteria does the job faster but both types excrete NH
3/NH
4. We should also consider that in this type of filter (slow flowing anaerobic filter) will a build up of organic matter (from food and from earlier bacteria growth) be rather large with time.
The above calculation is based on no spill of food - no overfeeding at all. The fact that most aquarium will be overfeed complicate things but much of it (especially in FO tanks - there the need of denitrification filters are more common than in reef tanks) will be processed by bacterial mineralisation.
Now some thought that´s maybe is far above my pay level

(over my incompetence level

) and just speculation and general thoughts.
Maybe
@Belgian Anthias is right that this (NH3/NH4 production of anaerobic heterotrophic bacteria) process is more troubling in a autotrophic based sulphur "de"nitrification filter compared with a normal heterotropic based denitrification process. However - I have in an sludge based anaerobic reactor measured NH
3/NH
4 levels in the middle of the reactor 200 higher than the content in both the ingoing and the the outgoing water! (fresh water and in a waste water treatment plant) The ingoing water content NO
3 too - the outgoing water not - there was clearly denitrification going on. The reactor had run undisturbed for nearly 10 years at that time.
I never have said anaerobic heterotrophic bacteria process is more troubling in a autotrophic based sulphur "de"nitrification filter compared with a normal heterotropic based denitrification process. In a sulphur denitrator the heterotrophic activities are limited to the available biomass to remineralise. As bio-mass production and organic carbon availability are a lot lower the risks for sulfate reduction is also lower.
As an heterotrophic denitrator produces a lot more biomass, must be fed organic carbon to continue to function and must be kept anoxic to function well, the risk for sulfate reduction is a lot higher as in a sulphur based denitrator. The produced HS and ammonia is from remineralized biomass and the use of sulfate due to nitrate starvation. In a sulfur denitrator only the dying autotrophic biomass will be used up to feed the heterotrophic anaerobic remineralization processes. At a low nitrate level most nitrate may be removed heterotrophiccally when using an anoxic kept sulfur denitrator. In such an environment +- 15% of nitrate may be reduced by DNRA producing ammonia. Still 0 nitrate in the affluent!
What´s Belgian Anthias seems to focus on is that when the NO
3 in the water will be near 0 - the reactor turning from being a autotrophic "de"nitrification reactor to be a heterotrophic anaerobic reactor.
If the effluent does not contain nitrate one has no control over nitrate availability in the reactor!
Correct, it will, because the nitrate availability will go down as the level decends and the flow is kept stable to keep the reactor anoxic. The effluent nitrate content will stay 0. And we do not have a sulphur denitrator any more as very little nitrate is reduced by the BADES process at a low nitrate level if the flow is managed in the function of the oxygen content to keep the reactor anoxic.
Using BADES the flow is managed in the function of the nitrate content, limiting sulfate reduction. As nitrate is still available all produced HS will be removed by the same bacteria while reducing nitrate.
The autotrophic sulphur bacteria will in some or another way take energy from the reduction process and competes out the heterotrophic denitrification bacteria (lack of DOC - however this is high above my level because reduction processes normally not gain energy - as I understand - they demand energy).
Not at all, as the cultivated autotrophic bacteria using elemental sulfur only can make use of HS if nitrate is available, as this is not the case they will be remineralized by heterotrophs using sulfate, producing ammonia and HS. One must be aware in an anoxic kept denitrator very little nitrate is entered at low nitrate levels.
However in an anaerobic process without NO
3 - the heterotrophic bacteria has to rely on other sources of electron acceptors in the cell metabolism. Next stage will favour the bacteria that use sulphur (sulphur compounds) as electron acceptors in the metabolism - leaving hydrogen sulphide as a waste (instead of N
2 when other bacteria can use NO
3 as electron acceptor) Maybe not need to say that a sulphur based reactor is high in just sulphur

. But in regardless if the heterotrophic bacteria use oxygen (aerobic processes), NO3, sulphur compounds, hydrogen or other compounds (anaerobic processes) as electron acceptors - their hunt for carbon (in the organic matter) will mineralise organic N into NH
3/NH
4.
The cultivated bacteria T. denitrificans are able to reduce sulphur compounds following both pathways, aerobically and anaerobically but they only can use HS and elemental sulfur following the anaerobic pathway. There are only 3 known species which are able to reduce HS and elemental sulfur using nitrate. ref:
https://www.baharini.eu/baharini/doku.php?id=nl:makazi:bio-chemie:thiobacillus_denitrificans
IMO - the concern that a classic sulphur based "de"nitrification reactor can turn to produce both NH
3/NH
4 and H2S is real.
However if the production of NH
3/NH
4 is negative in the long run or not - I will lean to see it as a positive effect for the all over growth of a reef aquarium. In FO - it can be different. Will it during normal conditions produce a toxic NH
3 spike or not? Probably not.
However - my observations and measurements at the wastewater plant I worked at back in the 90:ties indicate that high amount of NH
3/NH
4 can be trapped in the middle of an anaerobic reactor and what´s happens if the flow will rise through the reactor. We did this observations for a lot of years and used ion selective NH
3 probes in the analyse work.
Will the production of H
2S be negative. IMO if the H
2S will come out in a water with lot of oxygen - minor problems - however at low oxygen concentrations even i the free tank water - it can be deadly
We are not talking about a BATCH reactor, in which the HRT and processes are managed completely differently. Also, the parameters for the end product are completely different.
If H2S is produced in seawater, in a reef tank, a very high level of HS is present. In a sulphur denitrator this happens at a limited flow rate, even at this high level the risk is minimal.
Using a BADESS all this can be avoided.
But as stated above - I´m not sure that is always a true statement in a reef aquarium - I looks like me and
@Belgian Anthias play in the same part of the court in this case
Sincerely Lasse