For large areas and deep scratches wet sand with an small orbital sander,never in swirls, go back and forth, then up and down. Make sure you completely remove the lines from the previous grit. Keep going up in grit, 800, 1000, 1500, 2000, 2400 and higher if needed. My kit goes all the way to 12000.
Check out Micro Mesh. They have complete aquarium kits.
Novus works well on the outside where the scratches dont go too deep. I recently took out some minor surface scratches with Novus 3, then 2 with a Cyclo polisher.