apart from making sure your flow from the effluent is at 10%, and you dose your carbon you should be able to dial it back it. The slower the flow the more nitrification time. Keep in mind not to allow air back into the reactor.
The smelly bacteria will pass. I had it and most of us went through it. I placed a filter sock or coffee strainer on the effluent to catch the slime. Like you i increased the flow to flush it out, but only for short time, then put it back to 10% flow.
I had a similar problem with water back feeding through the dosing port caused by pressure build up. But I have a small pump used for GFO reactors so there is very little pressure to worry about. I read this was an issue so i made sure my tops of the reactor were screw tops and water tight. This way i can still access inside the reactor.
When you got the reactor at 10ppm, if it were me i would have left it be.
Just the other day i stopped dosing as my no3 is at 0,