Do you have a coarse sponge in the canister? I can’t remember the last time I cleaned the one on the skimmer, but I switch out the one in the canister every 6 months for a brand new one, and I rinse out the existing one once a month when I clean the canister.
I see no unfavorable change in parameters after any cleanings or changes, so I guess what I’m saying is I’d probably clean it out if mine looked like that. So long as you don’t change all of your media (including sponges that may or may not harbor good or bad bacteria, etc.), you shouldn’t expect any measurable effect.
If you do, either way, then you would have objective data (via testing) to tell you whether or not what is in there is good or bad. While many have said pineapple sponges are good, I also don’t think that the few that are growing on the sponge are making a measurable difference in your system. Just my opinion.
Sorry for the indirect answer, but I don’t want to give you a hard yes or no; rather I’ll just share my opinion as we have a similar filtration
I appreciate the answer. It’s not a definite yes or no I usually rinse that out but wasn’t sure if it was good or bad bacteria when it’s probably both and I should be focused on looking at the data to understand how it’s affecting my parameters.