It sounds like there are several issues here that need to be addressed.
First is pressure. You need higher than 55PSI to run two membranes. 50 PSI is fine for running one membrane, but not two. As for how much pressure, you'll need to ask BRS or Dow, but you likely need a booster pump to make your dual membrane setup work. Perhaps try unhooking one of the membranes and see if that solves your flow problem.
Second is the auto shutoff. The auto shutoff should be after the second membrane. The product water line should go into the top of the valve, where it says "IN", and the output should be going out the top of the valve were it says "OUT". The waste valve from your second RO membrane should go into the bottom of the switch on the IN side, and the waste line to your drain should go in the bottom of the OUT side.
Third is your unit's age and the carbon blocks. You mention that you just replaced the carbon blocks recently. If your RO/DI unit has been running for 10 months on the same carbon blocks, it's possible that the old blocks were no longer able to process the chlorine/chloramine in your water. If this is the case, both your membranes could be fried. Chlorine is especially damaging to RO membranes and can ruin them in short order. Chloramine is actually a little less harmful to RO membranes, but it can still ruin them given enough exposure. Personally, I would test each membrane, one at a time, to make sure they're still meeting the advertised rejection rate of 96% or higher. Hook each membrane up one at a time. Test the TDS before and after the membrane. If your tap water is 450 ppm TDS, the water after each membrane should be 18 ppm or less. If it's not, that membrane is no longer meeting the specified rejection rates and could benefit from being replaced. To prevent damage to your membranes in the future, always replace the carbon blocks and prefilters every 6 months on a schedule.
Fourth is the DI resin. If your product water ever reads more than 0 ppm TDS, the DI resin needs to be replaced, regardless of what the rest of your RO/DI system is doing.