Unfortunately you got what you paid for.
The so called portable RO and RO/DI systems will never equal a real full size reef quality RO/DI.
What is your tap water TDS, RO only TDS and final RO/DI TDS? What are you testing these with and how? What is the exact measured waste ratio? What is your water pressure and water temperature?
These pieces of information are critical to know with any RO/DI system and the only way to troubleshoot them.
Carbon blocks do not remove ammonia. The carbon ONLY removes the chlorine portion of chloramines and breaks the bond with the ammonia which is mostly removed by the RO membrane and polished off by the DI resin. If you do have chlormines it is important you have no larger than a 1 micron extruded carbon block which the portable probably does not have. Coarser carbon does not work well with chlormaines, or free chlorine for that matter either, another reason to invest in a much better reef quality RO/DI. Real reef quality RO/DI systems start at only $125 or so and are much more efficient since they have larger filters with more surface area and better retention time so they work better, last longer, cost less and give you better water quality. I hate seeing reefers get led down the wrong path and have to spend even more hard earned money to make a purchase really work.