I'd have to take a look at the RO you put together to see if it can be improved. Rejection is low at 92%
I'd also change those 20" x 4.5" filters you're using. Do you have trouble with organics? I'd hope not. If not, why are you running those incredibly tight carbon filters on well water? Similar question on your whole house sediment filter - 1 micron is incredibly tight for that application. The fact that these filters are reducing TDS (this is not their purpose) tells me they are triggering something in solution to come out of solution. From the looks of it I'd expect they are moving ferrous iron to ferric iron. Same thing with the softener. Softeners aren't intended to reduce tds - they contain an ion exchange resin. So TDS in should = TDS out. The fact that TDS out is lower tells me it is forcing something out of solution. Iron or Mn would be my guess... but the lab results will tell us.
The place to start is with a water test:
https://www.buckeyehydro.com/drinking-water-test/
I'd not blow this off, especially because you are using this water in your house.
You might be able to get the bacterial test done for free at your county health dept. This should be done at least annually.
Once we know the lab results, nearly any contaminant can be successfully treated.
Russ