Cyno. Try chemiclean. Works like a charm. Just make sure your skimmer is off. Otherwise if you don't want to go that route, you need to check your nutrient levels. Most likely you nitrates are up. Cut down of feeding some to help and run a refugium.
Need more info about the tank and a positive ID to know how to resolve. There are some easy home tests for dinos. A $15 toy microscope from Amazon is a lot more though