If every Monitora and Anacropora can be removed and placed into a QT tank and dipped every few days while the display tank runs fallow of montipora for several months. The nudibranchs only eat Montipora and some reports of them also eating Anacropora, however they do move around the tank. Removing the months is not going to remove them all from the system. The dips like most things will only affect the formed nudibranchs but will not affect the eggs as is common knowledge. Doing a series of dips and running the DT fallow can and will work to eradicate the nudibranchs, but it is up to the OP to decide if that is worth it or not.
The battle can be fought and won, however it is a lot of work to save what at this point is only shown to be 2 frags. Personally if I only had a few monti frags in a tank that was infected I would simply toss them and wait through fallow period.