Two A360WEs can work on mixed reef of those dimensions; I posted a PAR map for a 75g
here (same footprint as the 90g but not as tall). Placed smartly, you can keep many corals but your lights need to be hung no more than 6" over the water or the PAR is going to be much lower than what you see in my results.
The Red Sea magnesium test kit seems to be problematic for some people so you may actually want to try with another kit just to confirm your results (or maybe take a sample to the LFS).
I wouldn't worry about a target number for nitrates or phosphates, just bringing it to a detectable amount will be sufficient. My phosphates (PO4) are up to .23ppm right now and my acroporas are still chugging along; point here is that you have a fairly wide range to work within, don't get caught up in trying to hold it at a specific number. Turning off the phosphate reactor is a good place to start; I wouldn't feed more and turn off the reactor, just start with one (the reactor) and monitor for a couple weeks (you wont see any trend before that so don't make any changes for at least a couple weeks).
While balling methods work for many people, it may be a good idea to start with a reset of sorts. What I'm suggesting here is to do some larger water changes (upwards of 40%+ if possible) a number of times over the next couple weeks (i.e. four or five in two weeks) to "normalize" your parameters. This would ensure all the requisite major, minor, and trace elements are replenished. From there, you could go back to a balling method of choice and be reasonably confident your water parameters are at a good base point. An alternative would be the ICP to see if the water changes are even necessary; it will take roughly two weeks to get your results (ATI and Triton are my go to sources for ICP analysis as I just dont trust the others). ATI also tests your RO/DI water which is a nice addition and even costs less than Triton. If the ICP confirms you're deficient, you could then resort to larger water changes; I recommend this over trying to chase trace element levels with additives (cant beat the simplicity of water changes here).
I run carbon 24/7 just for water clarity and have had no issues with the fish or corals. Use it according to the manufacturers recommendation; I use Two Little Fishies at 1/4 cup per 25 gallons of water and change it every two weeks. You can also skip using it altogether if you like.
Are you using bio-pellets in your bio-reactor? If so, that is a form of carbon dosing that will lower nitrates and phosphates. If so, I suggest slowing the flow through the reactor way down or turning it off-line altogether. A gradual shut down over time will likely produce better results than shutting if off as nitrate/phosphate may shoot up to high levels over night which rarely ends well for your corals.
Lastly, more important than your absolute test results are the trends in those measurements. Do you have a history of results that you can track over the course of the past couple months? If so, do you notice any trends in your tanks health in regard to those measurements? For instance, my calcium levels have remained relatively consistent for the past 10 weeks (I test everything weekly)...
... but my phosphate levels have increased nine of the past 10 weeks.
The absolute number isn't all the important but identifying what caused the steady increase past nine weeks to has led to the steady increase is (in this case, I shut down the GFO reactor).