I'm glad you brought this up. I'm currently living in hotels, unable to QT, and would really like for someone to begin experimenting with hydrogen peroxide for fish disease purposes.
Specifically:
- To date, the best treatment protocol I have found for velvet is: 5 min FW dip + 90 min acriflavine bath + 10 days in CP (or copper), followed by transfer into a sterile HT. (Or 30 days in copper or CP if you don't have a second QT to work with.) What if we used H2O2 in lieu of acriflavine? Both are antiseptics designed to ward off infection.
- Due to antibiotics slow acting nature, I'm beginning to believe that antibiotics alone are not the best way to treat bacterial infections in fish. The fish needs immediate relief... "first aid" via an acriflavine or H2O2 bath before being placed into a QT dosed with antibiotics.
- I've had some success doing an acriflavine bath, followed by transfer into a sterile QT, to treat brook in clownfish. (Although sometimes multiple baths are required to completely knock it out, so a formalin bath is still the treatment of choice for brook.) How well would an H2O2 bath (or even in-tank treatment) work for treating Brooklynella?
I know some have already been using H2O2 to treat velvet and for other purposes (with mixed results), but I would prefer a more conservative approach that is well documented. Let's see what benefits this chemical can offer as an antiseptic and then go from there. This way we have something to fall back on if dosing H202 in your reef tank doesn't cure velvet and other diseases.

Using 3% H2O2 (most commonly available), I believe
@twilliard advised me to dose 1 ml (or 1/5 teaspoon) per gallon and start out by only doing a 30 minute bath in that solution. Of course, this is only a
starting point and we could ramp up the dosage/duration if the desired results were not achieved. However, if a fish were to die then it would be optimal to use a microscope to examine gill plates and skin to look for evidence of oxidizing damage.
The benefit of using H202 over something like acriflavine is clear, as the former can be sourced at any drug store or Walmart 24/7/365. And when a fish has velvet, he needs treatment
NOW. Below are links which mention using H202 to treat velvet and other diseases:
http://edis.ifas.ufl.edu/fa157
http://reefkeeping.com/issues/2004-07/sp/feature/index.htm
http://agrilife.org/fisheries/files...mportant-Parasite-of-Cultured-Marine-Fish.pdf
http://www.ultimatereef.com/articles/marinevelvet/