Ok, now the questions begin. 
I am currently in the cycle stage of my aquarium set up, so I wanted to clarify a couple of things:
1. I just had my wife run a water test. The Ammonia is 0, the Nitrates are ~5. So I'm assuming I am in the second part of the bacteria growth, waiting for those little guys to grow enough to process the Nitrates into Nitrites. This is 100lbs of uncured, and 35lbs of cured rock together. I have been cycling for a little over 2 weeks, don't remember exact amount of time. Is this normal? I would have expected the Ammonia to stay up for a little while during the die off of the uncured rock, and for the Ammonia and Nitrates to drop about the same time. Any thoughts on this?
2. Yellow Water. So, my water is yellow, which I kind of expected. From what I understand, that is a high concentration of protein in the water coming from the die off in the live rock. Now with enough protein to turn my water yellow, would I not expect a decent amount of Ammonia in the Water? I realize carbon and water changes can help alleviate this, but I don't want to water change until after the cycle is done, and I do not want to use carbon ever if possible. Thoughts?
3. Giving my curing rock a close look, I'm noticing a lot of crap on them that I missed during the initial cleaning. A lot of it is hanging there, and a lot is falling off as the powerheads push water by. I've been thinking of re-cleaning the rock (in a salt water tub) to try and get all the excess junk off them, is that something that normally happens? When I look at some of these tanks that are 'just set up' their rock is clean as a whistle.
4. Cycling the rock. I have seen articles about using live rock to cycle your tank when you first set up, which has been my plan of attack. I just want a clear answer: Will uncured rock cycle the tank fully?

I am currently in the cycle stage of my aquarium set up, so I wanted to clarify a couple of things:
1. I just had my wife run a water test. The Ammonia is 0, the Nitrates are ~5. So I'm assuming I am in the second part of the bacteria growth, waiting for those little guys to grow enough to process the Nitrates into Nitrites. This is 100lbs of uncured, and 35lbs of cured rock together. I have been cycling for a little over 2 weeks, don't remember exact amount of time. Is this normal? I would have expected the Ammonia to stay up for a little while during the die off of the uncured rock, and for the Ammonia and Nitrates to drop about the same time. Any thoughts on this?
2. Yellow Water. So, my water is yellow, which I kind of expected. From what I understand, that is a high concentration of protein in the water coming from the die off in the live rock. Now with enough protein to turn my water yellow, would I not expect a decent amount of Ammonia in the Water? I realize carbon and water changes can help alleviate this, but I don't want to water change until after the cycle is done, and I do not want to use carbon ever if possible. Thoughts?
3. Giving my curing rock a close look, I'm noticing a lot of crap on them that I missed during the initial cleaning. A lot of it is hanging there, and a lot is falling off as the powerheads push water by. I've been thinking of re-cleaning the rock (in a salt water tub) to try and get all the excess junk off them, is that something that normally happens? When I look at some of these tanks that are 'just set up' their rock is clean as a whistle.
4. Cycling the rock. I have seen articles about using live rock to cycle your tank when you first set up, which has been my plan of attack. I just want a clear answer: Will uncured rock cycle the tank fully?


