Probably easiest to use the OUT probe.
Disconnect the tee containing the probe from the DI canister and stick the longer length of tubing back in the canister. You should now have the tee containing the pribe and a short piece of tubing attached. Disconnect the tap water line at either the faucet or whatever adaption you are using or from the sediment filter canister, insert the tee in this line and reconnect it. Turn the water on, make sure the probe is rotated in the correct orientation and take a TDS reading. Write this reading down in a safe place as you will use this often, or should use it often to calculate your rejection rate or RO removal efficiency.
For me, I have two of the dual inline meters but I let the batteries go dead and never use them. I always rely on an ATC compensated handheld TDS meter since it can be used portable anywhere including my tap, RO only, RO/DI, ATO storage, LFS water, bottled water etc.