In the sump in the photo Hemmdog posted, the water level is intended to be kept within the height of the slots in the baffle before the return section. Those slots set the water height for the whole sump. An ATO system will actually monitor the water height for the whole sump except for the intake section.
I should clarify this.
If, when filling the sump, you stop filling before the water level rises above the bottom of the slots in the last baffle (or the top of that baffle, in case there are no slots), then an ATO system installed in the return section will indeed be monitoring only the level of the water in the last section. The rest of the sump will remain at a level even with the bottom of those slots (or the top of the last baffle, as applicable). I hope that didn't confuse the issue.

