My clown goby is about 3-4 weeks old, at first he never came out, never saw him eat. This past week he finally eats during the feeding frenzy and hangs out during the day now. Couple of days ago I noticed his who body looks like he has worts. It's not ick as its not white, they look to be under the skin... I'm thinking malnutrition from the first couple of weeks and stress? What do you guys think?
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); but FWIW I think you are making the right choice by treating/going fallow. 
Yes, losing fish to disease does suck. But you are figuring out what to do about it and moving forward, QT'ing all future fish purchases will greatly diminish the chance of this ever happening again in your DT. I say "greatly diminish the chance" because I do not believe in 100%. Not in anything.

