The
microbial processes in reef systems are dynamic even without a change in routine or maintenance. The calurpa certainly does explain the foaming. Besides removing the foam I'd try water changes with water and maybe a few pieces of rock from your other system. I'd suggest reading Aquabiomics article if you haven't already:
Studying the effects of live rock in a newly established aquarium shows that high-quality live rock promotes the rapid establishment of an effective biological filter and a microbial community similar to those found in mature reef tanks.
www.reef2reef.com
Here's some good videos by researchers looking at what's happening on reefs with microbial stuff and nutrients:
"Coral Reefs in the Microbial Seas" This video compliments Rohwer's book of the same title (Paper back is ~$20, Kindle is ~$10), both deal with the conflicting roles of the different types of DOC in reef ecosystems. While there is overlap bewteen his book and the video both have information not covered by the other and together give a broader view of the complex relationships found in reef ecosystems
Changing Seas - Mysterious Microbes
Nitrogen cycling in hte coral holobiont
BActeria and Sponges
Maintenance of Coral Reef Health (refferences at the end)
Optical Feedback Loop in Colorful Coral Bleaching