I don't know if this is actually the case, but it is possible that slowing down the pumps actually does more closely replicate the "real world" for fish. Aquariums are confined spaces and even if there is a lot of rock in the tank, it might be hard for fish to escape flow. Because oceans are so vast and the underwater terrain is much more complex, fish can more successfully seek out sheltered, lower flow areas during night time.
...again, I don't know if any of this is at all true. Just a hypothesis.